No. words: 1159; after pruning: 1133


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:430)  400  0.23 0.00 0.46  USDA005R3_B10_BE637864Ld04P004D04D10R3_078.ab1        1   431 (153)  C USDA005F3_B10_BE637864Ld04P004D04D10F3_078.ab1   (146)   429     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1  C USDA005F3_B10_BE637864Ld04P004D04D10F3_078.ab1   575 
  276    USDA005R3_B10_BE637864Ld04P004D04D10R3_078.ab1   131 
  288  C USDA005F3_B10_BE637864Ld04P004D04D10F3_078.ab1   288 
  292    USDA005R3_B10_BE637864Ld04P004D04D10R3_078.ab1   147 
  304  C USDA005F3_B10_BE637864Ld04P004D04D10F3_078.ab1   272 
  316    USDA005R3_B10_BE637864Ld04P004D04D10R3_078.ab1   171 
  348  C USDA005F3_B10_BE637864Ld04P004D04D10F3_078.ab1   228 
  360    USDA005R3_B10_BE637864Ld04P004D04D10R3_078.ab1   215 
  380  C USDA005F3_B10_BE637864Ld04P004D04D10F3_078.ab1   196 
  384    USDA005R3_B10_BE637864Ld04P004D04D10R3_078.ab1   239 
  392  C USDA005F3_B10_BE637864Ld04P004D04D10F3_078.ab1   184 
  416    USDA005R3_B10_BE637864Ld04P004D04D10R3_078.ab1   271 
  424  C USDA005F3_B10_BE637864Ld04P004D04D10F3_078.ab1   152 
  432    USDA005R3_B10_BE637864Ld04P004D04D10R3_078.ab1   287 
  440  C USDA005F3_B10_BE637864Ld04P004D04D10F3_078.ab1   136 
  456    USDA005R3_B10_BE637864Ld04P004D04D10R3_078.ab1   311 
  480  C USDA005F3_B10_BE637864Ld04P004D04D10F3_078.ab1    96 
  488    USDA005R3_B10_BE637864Ld04P004D04D10R3_078.ab1   343 
  492  C USDA005F3_B10_BE637864Ld04P004D04D10F3_078.ab1    84 
  496    USDA005R3_B10_BE637864Ld04P004D04D10R3_078.ab1   351 
  504  C USDA005F3_B10_BE637864Ld04P004D04D10F3_078.ab1    72 
  528    USDA005R3_B10_BE637864Ld04P004D04D10R3_078.ab1   383 
  552  C USDA005F3_B10_BE637864Ld04P004D04D10F3_078.ab1    25 
  556    USDA005R3_B10_BE637864Ld04P004D04D10R3_078.ab1   411 
Contig length: old 728, new 729

Contig length: old 729, new 729
New start: 0