No. words: 1177; after pruning: 1151


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:422)  396  0.00 0.00 0.47  USDA005R3_D10_BE637864Ld06P004D04D10R3_074.ab1        1   424 (181)  C USDA005F3_D10_BE637864Ld06P004D04D10F3_074.ab1   (150)   422     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C USDA005F3_D10_BE637864Ld06P004D04D10F3_074.ab1   572 
  198    USDA005R3_D10_BE637864Ld06P004D04D10R3_074.ab1    48 
  206  C USDA005F3_D10_BE637864Ld06P004D04D10F3_074.ab1   367 
  266    USDA005R3_D10_BE637864Ld06P004D04D10R3_074.ab1   116 
  294  C USDA005F3_D10_BE637864Ld06P004D04D10F3_074.ab1   279 
  298    USDA005R3_D10_BE637864Ld06P004D04D10R3_074.ab1   148 
  510  C USDA005F3_D10_BE637864Ld06P004D04D10F3_074.ab1    63 
  526    USDA005R3_D10_BE637864Ld06P004D04D10R3_074.ab1   376 
Contig length: old 754, new 755

Contig length: old 755, new 755
New start: 0