No. words: 1143; after pruning: 1117


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:436)  410  0.00 0.23 0.23  USDA005R3_H10_BE637864Ld10P004D04D10R3_066.ab1        1   437 (134)  C USDA005F3_H10_BE637864Ld10P004D04D10F3_066.ab1   (135)   437     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1  C USDA005F3_H10_BE637864Ld10P004D04D10F3_066.ab1   572 
  212    USDA005R3_H10_BE637864Ld10P004D04D10R3_066.ab1    76 
  220  C USDA005F3_H10_BE637864Ld10P004D04D10F3_066.ab1   353 
  256    USDA005R3_H10_BE637864Ld10P004D04D10R3_066.ab1   120 
  268  C USDA005F3_H10_BE637864Ld10P004D04D10F3_066.ab1   305 
  276    USDA005R3_H10_BE637864Ld10P004D04D10R3_066.ab1   140 
  284  C USDA005F3_H10_BE637864Ld10P004D04D10F3_066.ab1   289 
  292    USDA005R3_H10_BE637864Ld10P004D04D10R3_066.ab1   156 
  304  C USDA005F3_H10_BE637864Ld10P004D04D10F3_066.ab1   269 
  316    USDA005R3_H10_BE637864Ld10P004D04D10R3_066.ab1   180 
  320  C USDA005F3_H10_BE637864Ld10P004D04D10F3_066.ab1   253 
  324    USDA005R3_H10_BE637864Ld10P004D04D10R3_066.ab1   188 
  340  C USDA005F3_H10_BE637864Ld10P004D04D10F3_066.ab1   233 
  372    USDA005R3_H10_BE637864Ld10P004D04D10R3_066.ab1   236 
  412  C USDA005F3_H10_BE637864Ld10P004D04D10F3_066.ab1   161 
  428    USDA005R3_H10_BE637864Ld10P004D04D10R3_066.ab1   292 
  440  C USDA005F3_H10_BE637864Ld10P004D04D10F3_066.ab1   133 
  448    USDA005R3_H10_BE637864Ld10P004D04D10R3_066.ab1   312 
  492  C USDA005F3_H10_BE637864Ld10P004D04D10F3_066.ab1    81 
  500    USDA005R3_H10_BE637864Ld10P004D04D10R3_066.ab1   364 
  504  C USDA005F3_H10_BE637864Ld10P004D04D10F3_066.ab1    69 
  508    USDA005R3_H10_BE637864Ld10P004D04D10R3_066.ab1   372 
Contig length: old 706, new 707

Contig length: old 707, new 707
New start: 0