No. words: 690; after pruning: 664


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 0.8 (1,1:305)  286  0.00 0.33 0.33  USDA024F_E06_BE637864Ta21P043A07P004D101F1_040.ab1        2   306 (46)  C USDA024R_E06_BE637864Ta21P043A07P004D101R1_040.ab1   (33)   305     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  148 nodes

 76 str. conn. components

Path
    1  C USDA024R_E06_BE637864Ta21P043A07P004D101R1_040.ab1   338 
  232    USDA024F_E06_BE637864Ta21P043A07P004D101F1_040.ab1   199 
Contig length: old 384, new 385

Contig length: old 385, new 385
New start: 0