No. words: 1085; after pruning: 1022


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 1.5 (1,1:333)  307  0.31 0.00 0.31  USDA024F_H01_BE637864Td08P043H06P004D101F1_001.ab1        1   325 (46)  C USDA024R_H01_BE637864Td08P043H06P004D101R1_001.ab1   (381)   333    10 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  158 nodes

 81 str. conn. components

Path
    1  C USDA024R_H01_BE637864Td08P043H06P004D101R1_001.ab1   714 
  409    USDA024F_H01_BE637864Td08P043H06P004D101F1_001.ab1    28 
  422  C USDA024R_H01_BE637864Td08P043H06P004D101R1_001.ab1   293 
  434    USDA024F_H01_BE637864Td08P043H06P004D101F1_001.ab1    53 
  450  C USDA024R_H01_BE637864Td08P043H06P004D101R1_001.ab1   265 
  458    USDA024F_H01_BE637864Td08P043H06P004D101F1_001.ab1    77 
  470  C USDA024R_H01_BE637864Td08P043H06P004D101R1_001.ab1   245 
  478    USDA024F_H01_BE637864Td08P043H06P004D101F1_001.ab1    97 
  486  C USDA024R_H01_BE637864Td08P043H06P004D101R1_001.ab1   229 
  490    USDA024F_H01_BE637864Td08P043H06P004D101F1_001.ab1   109 
  498  C USDA024R_H01_BE637864Td08P043H06P004D101R1_001.ab1   217 
  506    USDA024F_H01_BE637864Td08P043H06P004D101F1_001.ab1   125 
  514  C USDA024R_H01_BE637864Td08P043H06P004D101R1_001.ab1   201 
  530    USDA024F_H01_BE637864Td08P043H06P004D101F1_001.ab1   149 
  546  C USDA024R_H01_BE637864Td08P043H06P004D101R1_001.ab1   169 
  550    USDA024F_H01_BE637864Td08P043H06P004D101F1_001.ab1   169 
Contig length: old 751, new 752

Contig length: old 752, new 752
New start: 0 
S Change at: 298; seg lengths: entry 2, contig 2
S Change at: 313; seg lengths: entry 1, contig 1
S Change at: 321; seg lengths: entry 1, contig 1