No. words: 1020; after pruning: 994


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 7.0 (1,1:475)  425  0.85 0.21 0.42  USDA010F_C05_BF200531As01P017F03P017F09F1_043.ab1        5   477 (34)  C USDA010R_C05_BF200531As01P017F03P017F09R1_043.ab1   (37)   472     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C USDA010R_C05_BF200531As01P017F03P017F09R1_043.ab1   509 
  499    USDA010F_C05_BF200531As01P017F03P017F09F1_043.ab1   466 
Contig length: old 544, new 544

Contig length: old 544, new 544
New start: 0