No. words: 1002; after pruning: 976


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:457)  417  1.09 0.00 0.22  USDA010F_D05_BF200531As02P017D03P017D09F1_041.ab1        1   458 (49)  C USDA010R_D05_BF200531As02P017D03P017D09R1_041.ab1   (38)   457     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C USDA010R_D05_BF200531As02P017D03P017D09R1_041.ab1   495 
  483    USDA010F_D05_BF200531As02P017D03P017D09F1_041.ab1   446 
  487  C USDA010R_D05_BF200531As02P017D03P017D09R1_041.ab1     9 
  491    USDA010F_D05_BF200531As02P017D03P017D09F1_041.ab1   454 
Contig length: old 544, new 544

Contig length: old 544, new 544
New start: 0