No. words: 1016; after pruning: 990


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:459)  422  0.43 0.22 0.22  USDA010F_F05_BF200531At02P017D03P017D09F1_037.ab1        1   460 (44)  C USDA010R_F05_BF200531At02P017D03P017D09R1_037.ab1   (52)   460     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C USDA010R_F05_BF200531At02P017D03P017D09R1_037.ab1   512 
  506    USDA010F_F05_BF200531At02P017D03P017D09F1_037.ab1   454 
Contig length: old 556, new 556

Contig length: old 556, new 556
New start: 0