No. words: 1322; after pruning: 1296


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:501)  465  0.20 0.20 0.20  USDA010F_B06_BF200531Ld04P017D03P017D09F1_046.ab1        1   502 (138)  C USDA010R_B06_BF200531Ld04P017D03P017D09R1_046.ab1   (180)   502     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C USDA010R_B06_BF200531Ld04P017D03P017D09R1_046.ab1   682 
  673    USDA010F_B06_BF200531Ld04P017D03P017D09F1_046.ab1   492 
Contig length: old 820, new 821

Contig length: old 821, new 821
New start: 0