No. words: 1323; after pruning: 1297


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 9.3 (1,1:500)  447  1.22 0.00 0.00  USDA010F_E06_BF200531Ld07P017D03P017D09F1_040.ab1        1   493 (149)  C USDA010R_E06_BF200531Ld07P017D03P017D09R1_040.ab1   (180)   501     9 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C USDA010R_E06_BF200531Ld07P017D03P017D09R1_040.ab1   681 
  626    USDA010F_E06_BF200531Ld07P017D03P017D09F1_040.ab1   446 
  635  C USDA010R_E06_BF200531Ld07P017D03P017D09R1_040.ab1    47 
  667    USDA010F_E06_BF200531Ld07P017D03P017D09F1_040.ab1   487 
Contig length: old 822, new 822

Contig length: old 822, new 822
New start: 0