No. words: 1312; after pruning: 1286


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.5 (1,1:500)  452  1.01 0.20 0.00  USDA010F_F06_BF200531Ld08P017D03P017D09F1_038.ab1        4   500 (145)  C USDA010R_F06_BF200531Ld08P017D03P017D09R1_038.ab1   (169)   498     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C USDA010R_F06_BF200531Ld08P017D03P017D09R1_038.ab1   667 
  618    USDA010F_F06_BF200531Ld08P017D03P017D09F1_038.ab1   451 
  629  C USDA010R_F06_BF200531Ld08P017D03P017D09R1_038.ab1    39 
  661    USDA010F_F06_BF200531Ld08P017D03P017D09F1_038.ab1   494 
Contig length: old 811, new 812

Contig length: old 812, new 812
New start: 0