No. words: 1319; after pruning: 1293


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.9 (1,1:482)  440  0.42 0.00 0.42  USDA010F_H06_BF200531Ld10P017D03P017D09F1_034.ab1        4   484 (149)  C USDA010R_H06_BF200531Ld10P017D03P017D09R1_034.ab1   (207)   479     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C USDA010R_H06_BF200531Ld10P017D03P017D09R1_034.ab1   686 
  661    USDA010F_H06_BF200531Ld10P017D03P017D09F1_034.ab1   457 
Contig length: old 836, new 837

Contig length: old 837, new 837
New start: 0 
S Change at: 673; seg lengths: entry 1, contig 1