No. words: 692; after pruning: 666


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 5.3 (1,1:370)  256  0.36 0.00 0.00  USDA022F_B06_BF200531Ta18P043B10P017F031F1_046.ab1        1   276 (2)  C USDA022R_B06_BF200531Ta18P043B10P017F031R1_046.ab1   (43)   371    96 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  138 nodes

 71 str. conn. components

Path
    1  C USDA022R_B06_BF200531Ta18P043B10P017F031R1_046.ab1   414 
   71    USDA022F_B06_BF200531Ta18P043B10P017F031F1_046.ab1    28 
  239  C USDA022R_B06_BF200531Ta18P043B10P017F031R1_046.ab1   176 
  243    USDA022F_B06_BF200531Ta18P043B10P017F031F1_046.ab1   200 
  255  C USDA022R_B06_BF200531Ta18P043B10P017F031R1_046.ab1   160 
  263    USDA022F_B06_BF200531Ta18P043B10P017F031F1_046.ab1   220 
  267  C USDA022R_B06_BF200531Ta18P043B10P017F031R1_046.ab1   148 
  279    USDA022F_B06_BF200531Ta18P043B10P017F031F1_046.ab1   236 
  291  C USDA022R_B06_BF200531Ta18P043B10P017F031R1_046.ab1   124 
  311    USDA022F_B06_BF200531Ta18P043B10P017F031F1_046.ab1   268 
  315  C USDA022R_B06_BF200531Ta18P043B10P017F031R1_046.ab1   100 
Contig length: old 414, new 414

Contig length: old 414, new 414
New start: 0