No. words: 633; after pruning: 607


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 2.6 (1,1:352)  199  3.70 0.00 0.00  USDA022F_B05_BF200531Td10P043B10P017F031F1_045.ab1        5   247 (0)  C USDA022R_B05_BF200531Td10P043B10P017F031R1_045.ab1   (37)   349   107 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  100 nodes

 52 str. conn. components

Path
    1  C USDA022R_B05_BF200531Td10P043B10P017F031R1_045.ab1   386 
   67    USDA022F_B05_BF200531Td10P043B10P017F031F1_045.ab1    34 
   87  C USDA022R_B05_BF200531Td10P043B10P017F031R1_045.ab1   300 
   91    USDA022F_B05_BF200531Td10P043B10P017F031F1_045.ab1    58 
  107  C USDA022R_B05_BF200531Td10P043B10P017F031R1_045.ab1   280 
  119    USDA022F_B05_BF200531Td10P043B10P017F031F1_045.ab1    86 
  156  C USDA022R_B05_BF200531Td10P043B10P017F031R1_045.ab1   231 
  180    USDA022F_B05_BF200531Td10P043B10P017F031F1_045.ab1   147 
  208  C USDA022R_B05_BF200531Td10P043B10P017F031R1_045.ab1   179 
  216    USDA022F_B05_BF200531Td10P043B10P017F031F1_045.ab1   183 
  224  C USDA022R_B05_BF200531Td10P043B10P017F031R1_045.ab1   163 
Contig length: old 386, new 386

Contig length: old 386, new 386
New start: 0