No. words: 1075; after pruning: 1049


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:482)  435  0.62 0.21 0.41  USDA010F_A05_BF200531Tu01P017F03P017F09F1_047.ab1        1   484 (54)  C USDA010R_A05_BF200531Tu01P017F03P017F09R1_047.ab1   (54)   483     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C USDA010R_A05_BF200531Tu01P017F03P017F09R1_047.ab1   537 
  524    USDA010F_A05_BF200531Tu01P017F03P017F09F1_047.ab1   470 
Contig length: old 592, new 592

Contig length: old 592, new 592
New start: 0