No. words: 1081; after pruning: 1055


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:484)  446  0.62 0.21 0.00  USDA010F_B05_BF200531Tu02P017F03P017F09F1_045.ab1        1   485 (58)  C USDA010R_B05_BF200531Tu02P017F03P017F09R1_045.ab1   (52)   486     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C USDA010R_B05_BF200531Tu02P017F03P017F09R1_045.ab1   538 
  535    USDA010F_B05_BF200531Tu02P017F03P017F09F1_045.ab1   482 
Contig length: old 596, new 596

Contig length: old 596, new 596
New start: 0