No. words: 1115; after pruning: 1089


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:506)  481  0.59 0.00 0.00  USDA013F_C11_BF291549As01P032B03P032B09F1_091.ab1        1   507 (51)  C USDA013R_C11_BF291549As01P032B03P032B09R1_091.ab1   (50)   507     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C USDA013R_C11_BF291549As01P032B03P032B09R1_091.ab1   557 
  552    USDA013F_C11_BF291549As01P032B03P032B09F1_091.ab1   502 
Contig length: old 608, new 608

Contig length: old 608, new 608
New start: 0