No. words: 1126; after pruning: 1100


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.1 (1,1:526)  508  0.00 0.00 0.00  USDA013F_D11_BF291549As02P032B03P032B09F1_089.ab1        2   527 (43)  C USDA013R_D11_BF291549As02P032B03P032B09R1_089.ab1   (30)   526     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C USDA013R_D11_BF291549As02P032B03P032B09R1_089.ab1   556 
  378    USDA013F_D11_BF291549As02P032B03P032B09F1_089.ab1   349 
  534  C USDA013R_D11_BF291549As02P032B03P032B09R1_089.ab1    23 
  538    USDA013F_D11_BF291549As02P032B03P032B09F1_089.ab1   509 
Contig length: old 599, new 599

Contig length: old 599, new 599
New start: 0