No. words: 1106; after pruning: 1080


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:531)  509  0.19 0.19 0.00  USDA013F_E11_BF291549At01P032B03P032B09F1_087.ab1        1   532 (11)  C USDA013R_E11_BF291549At01P032B03P032B09R1_087.ab1   (30)   533     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C USDA013R_E11_BF291549At01P032B03P032B09R1_087.ab1   563 
  412    USDA013F_E11_BF291549At01P032B03P032B09F1_087.ab1   381 
  420  C USDA013R_E11_BF291549At01P032B03P032B09R1_087.ab1   144 
  484    USDA013F_E11_BF291549At01P032B03P032B09F1_087.ab1   453 
  492  C USDA013R_E11_BF291549At01P032B03P032B09R1_087.ab1    72 
  516    USDA013F_E11_BF291549At01P032B03P032B09F1_087.ab1   485 
  528  C USDA013R_E11_BF291549At01P032B03P032B09R1_087.ab1    36 
  552    USDA013F_E11_BF291549At01P032B03P032B09F1_087.ab1   521 
Contig length: old 574, new 574

Contig length: old 574, new 574
New start: 0