No. words: 1101; after pruning: 1075


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.5 (1,1:527)  500  0.00 0.19 0.19  USDA013F_F11_BF291549At02P032B03P032B09F1_085.ab1        3   528 (17)  C USDA013R_F11_BF291549At02P032B03P032B09R1_085.ab1   (30)   526     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1  C USDA013R_F11_BF291549At02P032B03P032B09R1_085.ab1   556 
   80    USDA013F_F11_BF291549At02P032B03P032B09F1_085.ab1    51 
  104  C USDA013R_F11_BF291549At02P032B03P032B09R1_085.ab1   453 
  236    USDA013F_F11_BF291549At02P032B03P032B09F1_085.ab1   207 
  244  C USDA013R_F11_BF291549At02P032B03P032B09R1_085.ab1   313 
  412    USDA013F_F11_BF291549At02P032B03P032B09F1_085.ab1   383 
  444  C USDA013R_F11_BF291549At02P032B03P032B09R1_085.ab1   113 
  464    USDA013F_F11_BF291549At02P032B03P032B09F1_085.ab1   435 
  500  C USDA013R_F11_BF291549At02P032B03P032B09R1_085.ab1    57 
  516    USDA013F_F11_BF291549At02P032B03P032B09F1_085.ab1   487 
Contig length: old 573, new 574

Contig length: old 574, new 574
New start: 0