No. words: 1332; after pruning: 1306


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:514)  484  0.97 0.00 0.00  USDA013F_A12_BF291549Ld03P032B03P032B09F1_096.ab1        1   515 (152)  C USDA013R_A12_BF291549Ld03P032B03P032B09R1_096.ab1   (150)   515     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C USDA013R_A12_BF291549Ld03P032B03P032B09R1_096.ab1   665 
  585    USDA013F_A12_BF291549Ld03P032B03P032B09F1_096.ab1   435 
  589  C USDA013R_A12_BF291549Ld03P032B03P032B09R1_096.ab1    77 
  609    USDA013F_A12_BF291549Ld03P032B03P032B09F1_096.ab1   459 
  623  C USDA013R_A12_BF291549Ld03P032B03P032B09R1_096.ab1    43 
  631    USDA013F_A12_BF291549Ld03P032B03P032B09F1_096.ab1   481 
  635  C USDA013R_A12_BF291549Ld03P032B03P032B09R1_096.ab1    31 
  639    USDA013F_A12_BF291549Ld03P032B03P032B09F1_096.ab1   489 
  643  C USDA013R_A12_BF291549Ld03P032B03P032B09R1_096.ab1    23 
  647    USDA013F_A12_BF291549Ld03P032B03P032B09F1_096.ab1   497 
Contig length: old 817, new 817

Contig length: old 817, new 817
New start: 0