No. words: 1288; after pruning: 1248


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:463)  445  0.22 0.00 0.00  USDA013F_B12_BF291549Ld04P032B03P032B09F1_094.ab1        1   464 (167)  C USDA013R_B12_BF291549Ld04P032B03P032B09R1_094.ab1   (193)   464     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C USDA013R_B12_BF291549Ld04P032B03P032B09R1_094.ab1   657 
  487    USDA013F_B12_BF291549Ld04P032B03P032B09F1_094.ab1   294 
  563  C USDA013R_B12_BF291549Ld04P032B03P032B09R1_094.ab1    95 
  567    USDA013F_B12_BF291549Ld04P032B03P032B09F1_094.ab1   374 
  571  C USDA013R_B12_BF291549Ld04P032B03P032B09R1_094.ab1    87 
  579    USDA013F_B12_BF291549Ld04P032B03P032B09F1_094.ab1   386 
  583  C USDA013R_B12_BF291549Ld04P032B03P032B09R1_094.ab1    75 
  587    USDA013F_B12_BF291549Ld04P032B03P032B09F1_094.ab1   394 
  591  C USDA013R_B12_BF291549Ld04P032B03P032B09R1_094.ab1    67 
  603    USDA013F_B12_BF291549Ld04P032B03P032B09F1_094.ab1   410 
  619  C USDA013R_B12_BF291549Ld04P032B03P032B09R1_094.ab1    39 
  627    USDA013F_B12_BF291549Ld04P032B03P032B09F1_094.ab1   434 
  639  C USDA013R_B12_BF291549Ld04P032B03P032B09R1_094.ab1    19 
  651    USDA013F_B12_BF291549Ld04P032B03P032B09F1_094.ab1   458 
Contig length: old 824, new 824

Contig length: old 824, new 824
New start: 0 
S Change at: 677; seg lengths: entry 1, contig 1