No. words: 1329; after pruning: 1289


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:510)  481  0.98 0.00 0.00  USDA013F_C12_BF291549Ld05P032B03P032B09F1_092.ab1        1   511 (156)  C USDA013R_C12_BF291549Ld05P032B03P032B09R1_092.ab1   (151)   511     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C USDA013R_C12_BF291549Ld05P032B03P032B09R1_092.ab1   662 
  561    USDA013F_C12_BF291549Ld05P032B03P032B09F1_092.ab1   410 
  585  C USDA013R_C12_BF291549Ld05P032B03P032B09R1_092.ab1    78 
  589    USDA013F_C12_BF291549Ld05P032B03P032B09F1_092.ab1   438 
  593  C USDA013R_C12_BF291549Ld05P032B03P032B09R1_092.ab1    70 
  605    USDA013F_C12_BF291549Ld05P032B03P032B09F1_092.ab1   454 
  621  C USDA013R_C12_BF291549Ld05P032B03P032B09R1_092.ab1    42 
  629    USDA013F_C12_BF291549Ld05P032B03P032B09F1_092.ab1   478 
  637  C USDA013R_C12_BF291549Ld05P032B03P032B09R1_092.ab1    26 
  658    USDA013F_C12_BF291549Ld05P032B03P032B09F1_092.ab1   507 
Contig length: old 818, new 818

Contig length: old 818, new 818
New start: 0