No. words: 1342; after pruning: 1316


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.9 (1,1:526)  503  0.00 0.19 0.00  USDA013F_D12_BF291549Ld06P032B03P032B09F1_090.ab1        3   526 (158)  C USDA013R_D12_BF291549Ld06P032B03P032B09R1_090.ab1   (133)   525     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C USDA013R_D12_BF291549Ld06P032B03P032B09R1_090.ab1   658 
  517    USDA013F_D12_BF291549Ld06P032B03P032B09F1_090.ab1   386 
Contig length: old 815, new 815

Contig length: old 815, new 815
New start: 0