No. words: 1341; after pruning: 1301


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:509)  493  0.00 0.00 0.00  USDA013F_E12_BF291549Ld07P032B03P032B09F1_088.ab1        1   510 (143)  C USDA013R_E12_BF291549Ld07P032B03P032B09R1_088.ab1   (178)   510     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C USDA013R_E12_BF291549Ld07P032B03P032B09R1_088.ab1   688 
  542    USDA013F_E12_BF291549Ld07P032B03P032B09F1_088.ab1   364 
Contig length: old 831, new 831

Contig length: old 831, new 831
New start: 0 
S Change at: 707; seg lengths: entry 1, contig 1