No. words: 1357; after pruning: 1331


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.3 (1,1:527)  500  0.57 0.00 0.00  USDA013F_G12_BF291549Ld09P032B03P032B09F1_084.ab1        3   528 (141)  C USDA013R_G12_BF291549Ld09P032B03P032B09R1_084.ab1   (162)   526     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C USDA013R_G12_BF291549Ld09P032B03P032B09R1_084.ab1   688 
  513    USDA013F_G12_BF291549Ld09P032B03P032B09F1_084.ab1   353 
  593  C USDA013R_G12_BF291549Ld09P032B03P032B09R1_084.ab1    96 
  597    USDA013F_G12_BF291549Ld09P032B03P032B09F1_084.ab1   437 
  621  C USDA013R_G12_BF291549Ld09P032B03P032B09R1_084.ab1    68 
  629    USDA013F_G12_BF291549Ld09P032B03P032B09F1_084.ab1   469 
  662  C USDA013R_G12_BF291549Ld09P032B03P032B09R1_084.ab1    27 
  666    USDA013F_G12_BF291549Ld09P032B03P032B09F1_084.ab1   506 
  670  C USDA013R_G12_BF291549Ld09P032B03P032B09R1_084.ab1    19 
  674    USDA013F_G12_BF291549Ld09P032B03P032B09F1_084.ab1   514 
Contig length: old 829, new 829

Contig length: old 829, new 829
New start: 0