No. words: 1006; after pruning: 980


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.5 (1,1:465)  440  0.00 0.43 0.00  USDA020F_H06_BF291549Sn24P043C02P032B091F1_034.ab1        1   464 (34)  C USDA020R_H06_BF291549Sn24P043C02P032B091R1_034.ab1   (41)   467     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C USDA020R_H06_BF291549Sn24P043C02P032B091R1_034.ab1   508 
  167    USDA020F_H06_BF291549Sn24P043C02P032B091F1_034.ab1   124 
  207  C USDA020R_H06_BF291549Sn24P043C02P032B091R1_034.ab1   302 
  299    USDA020F_H06_BF291549Sn24P043C02P032B091F1_034.ab1   256 
  367  C USDA020R_H06_BF291549Sn24P043C02P032B091R1_034.ab1   142 
  387    USDA020F_H06_BF291549Sn24P043C02P032B091F1_034.ab1   344 
  427  C USDA020R_H06_BF291549Sn24P043C02P032B091R1_034.ab1    82 
  463    USDA020F_H06_BF291549Sn24P043C02P032B091F1_034.ab1   420 
  471  C USDA020R_H06_BF291549Sn24P043C02P032B091R1_034.ab1    38 
  475    USDA020F_H06_BF291549Sn24P043C02P032B091F1_034.ab1   432 
Contig length: old 540, new 541

Contig length: old 541, new 541
New start: 0