No. words: 988; after pruning: 962


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.4 (1,1:446)  428  0.00 0.22 0.00  USDA020F_D05_BF291549Ta12P043C02P032B091F1_041.ab1        2   447 (53)  C USDA020R_D05_BF291549Ta12P043C02P032B091R1_041.ab1   (41)   447     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C USDA020R_D05_BF291549Ta12P043C02P032B091R1_041.ab1   488 
  226    USDA020F_D05_BF291549Ta12P043C02P032B091F1_041.ab1   185 
  238  C USDA020R_D05_BF291549Ta12P043C02P032B091R1_041.ab1   251 
  302    USDA020F_D05_BF291549Ta12P043C02P032B091F1_041.ab1   261 
  318  C USDA020R_D05_BF291549Ta12P043C02P032B091R1_041.ab1   171 
  346    USDA020F_D05_BF291549Ta12P043C02P032B091F1_041.ab1   305 
  358  C USDA020R_D05_BF291549Ta12P043C02P032B091R1_041.ab1   131 
  406    USDA020F_D05_BF291549Ta12P043C02P032B091F1_041.ab1   365 
  418  C USDA020R_D05_BF291549Ta12P043C02P032B091R1_041.ab1    71 
  434    USDA020F_D05_BF291549Ta12P043C02P032B091F1_041.ab1   393 
  450  C USDA020R_D05_BF291549Ta12P043C02P032B091R1_041.ab1    39 
  454    USDA020F_D05_BF291549Ta12P043C02P032B091F1_041.ab1   413 
Contig length: old 541, new 541

Contig length: old 541, new 541
New start: 0