No. words: 968; after pruning: 942


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:445)  428  0.00 0.22 0.00  USDA020F_G06_BF291549Ta23P043C02P032B091F1_036.ab1        1   446 (43)  C USDA020R_G06_BF291549Ta23P043C02P032B091R1_036.ab1   (32)   447     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C USDA020R_G06_BF291549Ta23P043C02P032B091R1_036.ab1   479 
  165    USDA020F_G06_BF291549Ta23P043C02P032B091F1_036.ab1   132 
  197  C USDA020R_G06_BF291549Ta23P043C02P032B091R1_036.ab1   283 
  325    USDA020F_G06_BF291549Ta23P043C02P032B091F1_036.ab1   292 
  361  C USDA020R_G06_BF291549Ta23P043C02P032B091R1_036.ab1   119 
  381    USDA020F_G06_BF291549Ta23P043C02P032B091F1_036.ab1   348 
Contig length: old 522, new 522

Contig length: old 522, new 522
New start: 0