No. words: 990; after pruning: 964


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.4 (1,1:449)  426  0.00 0.45 0.00  USDA020F_A05_BF291549Td09P043C02P032B091F1_047.ab1        1   449 (49)  C USDA020R_A05_BF291549Td09P043C02P032B091R1_047.ab1   (41)   451     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C USDA020R_A05_BF291549Td09P043C02P032B091R1_047.ab1   492 
  161    USDA020F_A05_BF291549Td09P043C02P032B091F1_047.ab1   118 
  189  C USDA020R_A05_BF291549Td09P043C02P032B091R1_047.ab1   304 
  201    USDA020F_A05_BF291549Td09P043C02P032B091F1_047.ab1   158 
  209  C USDA020R_A05_BF291549Td09P043C02P032B091R1_047.ab1   284 
  217    USDA020F_A05_BF291549Td09P043C02P032B091F1_047.ab1   174 
  277  C USDA020R_A05_BF291549Td09P043C02P032B091R1_047.ab1   216 
  309    USDA020F_A05_BF291549Td09P043C02P032B091F1_047.ab1   266 
  369  C USDA020R_A05_BF291549Td09P043C02P032B091R1_047.ab1   124 
  405    USDA020F_A05_BF291549Td09P043C02P032B091F1_047.ab1   362 
  461  C USDA020R_A05_BF291549Td09P043C02P032B091R1_047.ab1    32 
  477    USDA020F_A05_BF291549Td09P043C02P032B091F1_047.ab1   434 
Contig length: old 540, new 541

Contig length: old 541, new 541
New start: 0