No. words: 1106; after pruning: 1080


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.0 (1,1:530)  503  0.00 0.19 0.19  USDA013F_B11_BF291549Tu02P032B03P032B09F1_093.ab1        3   531 (15)  C USDA013R_B11_BF291549Tu02P032B03P032B09R1_093.ab1   (31)   529     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C USDA013R_B11_BF291549Tu02P032B03P032B09R1_093.ab1   560 
  441    USDA013F_B11_BF291549Tu02P032B03P032B09F1_093.ab1   411 
Contig length: old 575, new 576

Contig length: old 576, new 576
New start: 0