No. words: 1592; after pruning: 1552


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.8 (1,1:722)  702  0.28 0.00 0.14  USDA014F_G03_BF429033Ld01P032C03P032C09F1_019.ab1        1   723 (52)  C USDA014R_G03_BF429033Ld01P032C03P032C09R1_019.ab1   (95)   722     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C USDA014R_G03_BF429033Ld01P032C03P032C09R1_019.ab1   817 
  107    USDA014F_G03_BF429033Ld01P032C03P032C09F1_019.ab1    12 
  155  C USDA014R_G03_BF429033Ld01P032C03P032C09R1_019.ab1   663 
  159    USDA014F_G03_BF429033Ld01P032C03P032C09F1_019.ab1    64 
  167  C USDA014R_G03_BF429033Ld01P032C03P032C09R1_019.ab1   651 
  171    USDA014F_G03_BF429033Ld01P032C03P032C09F1_019.ab1    76 
  183  C USDA014R_G03_BF429033Ld01P032C03P032C09R1_019.ab1   635 
  195    USDA014F_G03_BF429033Ld01P032C03P032C09F1_019.ab1   100 
  199  C USDA014R_G03_BF429033Ld01P032C03P032C09R1_019.ab1   619 
  219    USDA014F_G03_BF429033Ld01P032C03P032C09F1_019.ab1   124 
  223  C USDA014R_G03_BF429033Ld01P032C03P032C09R1_019.ab1   595 
  723    USDA014F_G03_BF429033Ld01P032C03P032C09F1_019.ab1   628 
  727  C USDA014R_G03_BF429033Ld01P032C03P032C09R1_019.ab1    91 
  811    USDA014F_G03_BF429033Ld01P032C03P032C09F1_019.ab1   717 
Contig length: old 869, new 869

Contig length: old 869, new 869
New start: 0