No. words: 1643; after pruning: 1617


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:732)  704  0.00 0.27 0.27  USDA014F_H03_BF429033Ld02P032C03P032C09F1_017.ab1        1   734 (85)  C USDA014R_H03_BF429033Ld02P032C03P032C09R1_017.ab1   (90)   734     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1  C USDA014R_H03_BF429033Ld02P032C03P032C09R1_017.ab1   824 
  141    USDA014F_H03_BF429033Ld02P032C03P032C09F1_017.ab1    49 
  161  C USDA014R_H03_BF429033Ld02P032C03P032C09R1_017.ab1   664 
  173    USDA014F_H03_BF429033Ld02P032C03P032C09F1_017.ab1    81 
  673  C USDA014R_H03_BF429033Ld02P032C03P032C09R1_017.ab1   152 
  717    USDA014F_H03_BF429033Ld02P032C03P032C09F1_017.ab1   625 
  741  C USDA014R_H03_BF429033Ld02P032C03P032C09R1_017.ab1    84 
  757    USDA014F_H03_BF429033Ld02P032C03P032C09F1_017.ab1   665 
  765  C USDA014R_H03_BF429033Ld02P032C03P032C09R1_017.ab1    60 
  793    USDA014F_H03_BF429033Ld02P032C03P032C09F1_017.ab1   701 
Contig length: old 910, new 911

Contig length: old 911, new 911
New start: 0