No. words: 1272; after pruning: 1246


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.2 (1,1:727)  397  0.48 0.24 0.00  USDA014F_A04_BF429033Ld03P032C03P032C09F1_032.ab1        1   415 (0)  C USDA014R_A04_BF429033Ld03P032C03P032C09R1_032.ab1   (128)   729   314 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  198 nodes

 101 str. conn. components

Path
    1  C USDA014R_A04_BF429033Ld03P032C03P032C09R1_032.ab1   857 
  161    USDA014F_A04_BF429033Ld03P032C03P032C09F1_032.ab1    32 
  173  C USDA014R_A04_BF429033Ld03P032C03P032C09R1_032.ab1   685 
  177    USDA014F_A04_BF429033Ld03P032C03P032C09F1_032.ab1    48 
  193  C USDA014R_A04_BF429033Ld03P032C03P032C09R1_032.ab1   665 
  197    USDA014F_A04_BF429033Ld03P032C03P032C09F1_032.ab1    68 
  201  C USDA014R_A04_BF429033Ld03P032C03P032C09R1_032.ab1   657 
  205    USDA014F_A04_BF429033Ld03P032C03P032C09F1_032.ab1    76 
  209  C USDA014R_A04_BF429033Ld03P032C03P032C09R1_032.ab1   649 
  221    USDA014F_A04_BF429033Ld03P032C03P032C09F1_032.ab1    92 
  229  C USDA014R_A04_BF429033Ld03P032C03P032C09R1_032.ab1   629 
  237    USDA014F_A04_BF429033Ld03P032C03P032C09F1_032.ab1   108 
  241  C USDA014R_A04_BF429033Ld03P032C03P032C09R1_032.ab1   617 
  245    USDA014F_A04_BF429033Ld03P032C03P032C09F1_032.ab1   116 
  253  C USDA014R_A04_BF429033Ld03P032C03P032C09R1_032.ab1   605 
  261    USDA014F_A04_BF429033Ld03P032C03P032C09F1_032.ab1   132 
  273  C USDA014R_A04_BF429033Ld03P032C03P032C09R1_032.ab1   585 
Contig length: old 857, new 857

Contig length: old 857, new 857
New start: 0