No. words: 1148; after pruning: 1122


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 5.2 (1,1:737)  268  0.36 0.36 0.00  USDA014F_B04_BF429033Ld04P032C03P032C09F1_030.ab1        2   279 (3)  C USDA014R_B04_BF429033Ld04P032C03P032C09R1_030.ab1   (128)   738   460 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  136 nodes

 70 str. conn. components

Path
    1  C USDA014R_B04_BF429033Ld04P032C03P032C09R1_030.ab1   866 
  159    USDA014F_B04_BF429033Ld04P032C03P032C09F1_030.ab1    31 
  203  C USDA014R_B04_BF429033Ld04P032C03P032C09R1_030.ab1   664 
  207    USDA014F_B04_BF429033Ld04P032C03P032C09F1_030.ab1    79 
  215  C USDA014R_B04_BF429033Ld04P032C03P032C09R1_030.ab1   652 
  219    USDA014F_B04_BF429033Ld04P032C03P032C09F1_030.ab1    91 
  243  C USDA014R_B04_BF429033Ld04P032C03P032C09R1_030.ab1   624 
  247    USDA014F_B04_BF429033Ld04P032C03P032C09F1_030.ab1   119 
  255  C USDA014R_B04_BF429033Ld04P032C03P032C09R1_030.ab1   612 
  271    USDA014F_B04_BF429033Ld04P032C03P032C09F1_030.ab1   143 
  275  C USDA014R_B04_BF429033Ld04P032C03P032C09R1_030.ab1   592 
  279    USDA014F_B04_BF429033Ld04P032C03P032C09F1_030.ab1   151 
  283  C USDA014R_B04_BF429033Ld04P032C03P032C09R1_030.ab1   584 
Contig length: old 866, new 866

Contig length: old 866, new 866
New start: 0