No. words: 1037; after pruning: 997


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.5 (1,1:718)  170  0.56 1.11 0.00  USDA014F_C04_BF429033Ld05P032C03P032C09F1_028.ab1        1   180 (0)  C USDA014R_C04_BF429033Ld05P032C03P032C09R1_028.ab1   (137)   720   539 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  82 nodes

 43 str. conn. components

Path
    1  C USDA014R_C04_BF429033Ld05P032C03P032C09R1_028.ab1   857 
  159    USDA014F_C04_BF429033Ld05P032C03P032C09F1_028.ab1    20 
  181  C USDA014R_C04_BF429033Ld05P032C03P032C09R1_028.ab1   677 
  193    USDA014F_C04_BF429033Ld05P032C03P032C09F1_028.ab1    54 
  201  C USDA014R_C04_BF429033Ld05P032C03P032C09R1_028.ab1   657 
  245    USDA014F_C04_BF429033Ld05P032C03P032C09F1_028.ab1   106 
  249  C USDA014R_C04_BF429033Ld05P032C03P032C09R1_028.ab1   609 
Contig length: old 857, new 857

Contig length: old 857, new 857
New start: 0