No. words: 972; after pruning: 946


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.0 (1,1:718)  146  1.31 0.00 0.00  USDA014F_D04_BF429033Ld06P032C03P032C09F1_026.ab1        1   153 (0)  C USDA014R_D04_BF429033Ld06P032C03P032C09R1_026.ab1   (100)   719   567 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  72 nodes

 38 str. conn. components

Path
    1  C USDA014R_D04_BF429033Ld06P032C03P032C09R1_026.ab1   819 
  128    USDA014F_D04_BF429033Ld06P032C03P032C09F1_026.ab1    28 
  132  C USDA014R_D04_BF429033Ld06P032C03P032C09R1_026.ab1   688 
Contig length: old 819, new 819

Contig length: old 819, new 819
New start: 0