No. words: 1647; after pruning: 1607


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.1 (1,1:727)  710  0.14 0.14 0.00  USDA014F_G04_BF429033Ld09P032C03P032C09F1_020.ab1        1   728 (58)  C USDA014R_G04_BF429033Ld09P032C03P032C09R1_020.ab1   (132)   729     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1  C USDA014R_G04_BF429033Ld09P032C03P032C09R1_020.ab1   861 
  165    USDA014F_G04_BF429033Ld09P032C03P032C09F1_020.ab1    32 
  237  C USDA014R_G04_BF429033Ld09P032C03P032C09R1_020.ab1   625 
  241    USDA014F_G04_BF429033Ld09P032C03P032C09F1_020.ab1   108 
  285  C USDA014R_G04_BF429033Ld09P032C03P032C09R1_020.ab1   577 
  313    USDA014F_G04_BF429033Ld09P032C03P032C09F1_020.ab1   180 
  381  C USDA014R_G04_BF429033Ld09P032C03P032C09R1_020.ab1   481 
  405    USDA014F_G04_BF429033Ld09P032C03P032C09F1_020.ab1   272 
  525  C USDA014R_G04_BF429033Ld09P032C03P032C09R1_020.ab1   337 
  589    USDA014F_G04_BF429033Ld09P032C03P032C09F1_020.ab1   456 
  613  C USDA014R_G04_BF429033Ld09P032C03P032C09R1_020.ab1   249 
  745    USDA014F_G04_BF429033Ld09P032C03P032C09F1_020.ab1   612 
  749  C USDA014R_G04_BF429033Ld09P032C03P032C09R1_020.ab1   113 
  801    USDA014F_G04_BF429033Ld09P032C03P032C09F1_020.ab1   668 
  805  C USDA014R_G04_BF429033Ld09P032C03P032C09R1_020.ab1    57 
  833    USDA014F_G04_BF429033Ld09P032C03P032C09F1_020.ab1   700 
  837  C USDA014R_G04_BF429033Ld09P032C03P032C09R1_020.ab1    25 
  853    USDA014F_G04_BF429033Ld09P032C03P032C09F1_020.ab1   720 
Contig length: old 919, new 919

Contig length: old 919, new 919
New start: 0