No. words: 1656; after pruning: 1630


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 15.4 (1,1:729)  708  0.14 0.00 0.14  USDA014F_H04_BF429033Ld10P032C03P032C09F1_018.ab1        2   730 (33)  C USDA014R_H04_BF429033Ld10P032C03P032C09R1_018.ab1   (165)   728     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  360 nodes

 182 str. conn. components

Path
    1  C USDA014R_H04_BF429033Ld10P032C03P032C09R1_018.ab1   893 
  181    USDA014F_H04_BF429033Ld10P032C03P032C09F1_018.ab1    17 
  189  C USDA014R_H04_BF429033Ld10P032C03P032C09R1_018.ab1   705 
  197    USDA014F_H04_BF429033Ld10P032C03P032C09F1_018.ab1    33 
  201  C USDA014R_H04_BF429033Ld10P032C03P032C09R1_018.ab1   693 
  213    USDA014F_H04_BF429033Ld10P032C03P032C09F1_018.ab1    49 
  305  C USDA014R_H04_BF429033Ld10P032C03P032C09R1_018.ab1   589 
  613    USDA014F_H04_BF429033Ld10P032C03P032C09F1_018.ab1   449 
  621  C USDA014R_H04_BF429033Ld10P032C03P032C09R1_018.ab1   273 
  801    USDA014F_H04_BF429033Ld10P032C03P032C09F1_018.ab1   637 
  805  C USDA014R_H04_BF429033Ld10P032C03P032C09R1_018.ab1    89 
  852    USDA014F_H04_BF429033Ld10P032C03P032C09F1_018.ab1   688 
  856  C USDA014R_H04_BF429033Ld10P032C03P032C09R1_018.ab1    38 
  884    USDA014F_H04_BF429033Ld10P032C03P032C09F1_018.ab1   720 
Contig length: old 926, new 927

Contig length: old 927, new 927
New start: 0