No. words: 1136; after pruning: 1110


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:722)  357  0.27 0.00 0.00  USDA014F_A03_BF429033Tu01P032C03P032C09F1_031.ab1        1   367 (0)  C USDA014R_A03_BF429033Tu01P032C03P032C09R1_031.ab1   (46)   723   357 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1  C USDA014R_A03_BF429033Tu01P032C03P032C09R1_031.ab1   769 
   66    USDA014F_A03_BF429033Tu01P032C03P032C09F1_031.ab1    20 
  106  C USDA014R_A03_BF429033Tu01P032C03P032C09R1_031.ab1   664 
  110    USDA014F_A03_BF429033Tu01P032C03P032C09F1_031.ab1    64 
  134  C USDA014R_A03_BF429033Tu01P032C03P032C09R1_031.ab1   636 
  150    USDA014F_A03_BF429033Tu01P032C03P032C09F1_031.ab1   104 
  154  C USDA014R_A03_BF429033Tu01P032C03P032C09R1_031.ab1   616 
  270    USDA014F_A03_BF429033Tu01P032C03P032C09F1_031.ab1   224 
  278  C USDA014R_A03_BF429033Tu01P032C03P032C09R1_031.ab1   492 
Contig length: old 769, new 769

Contig length: old 769, new 769
New start: 0