No. words: 1035; after pruning: 1009


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 7.2 (1,1:381)  375  0.00 0.00 0.00  USDA004F_G05_BF429045Ld01P004C05C11F1_036.ab1        5   382 (154)  C USDA004R_G05_BF429045Ld01P004C05C11R1_036.ab1   (121)   378     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C USDA004R_G05_BF429045Ld01P004C05C11R1_036.ab1   499 
  169    USDA004F_G05_BF429045Ld01P004C05C11F1_036.ab1    52 
  173  C USDA004R_G05_BF429045Ld01P004C05C11R1_036.ab1   327 
  193    USDA004F_G05_BF429045Ld01P004C05C11F1_036.ab1    76 
  197  C USDA004R_G05_BF429045Ld01P004C05C11R1_036.ab1   303 
  217    USDA004F_G05_BF429045Ld01P004C05C11F1_036.ab1   100 
  229  C USDA004R_G05_BF429045Ld01P004C05C11R1_036.ab1   271 
  245    USDA004F_G05_BF429045Ld01P004C05C11F1_036.ab1   128 
  261  C USDA004R_G05_BF429045Ld01P004C05C11R1_036.ab1   239 
  265    USDA004F_G05_BF429045Ld01P004C05C11F1_036.ab1   148 
  273  C USDA004R_G05_BF429045Ld01P004C05C11R1_036.ab1   227 
  313    USDA004F_G05_BF429045Ld01P004C05C11F1_036.ab1   196 
  345  C USDA004R_G05_BF429045Ld01P004C05C11R1_036.ab1   155 
  349    USDA004F_G05_BF429045Ld01P004C05C11F1_036.ab1   232 
  357  C USDA004R_G05_BF429045Ld01P004C05C11R1_036.ab1   143 
  373    USDA004F_G05_BF429045Ld01P004C05C11F1_036.ab1   256 
  433  C USDA004R_G05_BF429045Ld01P004C05C11R1_036.ab1    67 
  437    USDA004F_G05_BF429045Ld01P004C05C11F1_036.ab1   320 
Contig length: old 653, new 653

Contig length: old 653, new 653
New start: 0