No. words: 1049; after pruning: 1023


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:402)  384  0.00 0.00 0.99  USDA004F_H05_BF429045Ld02P004C05C11F1_044.ab1        1   406 (135)  C USDA004R_H05_BF429045Ld02P004C05C11R1_044.ab1   (106)   402     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  192 nodes

 98 str. conn. components

Path
    1  C USDA004R_H05_BF429045Ld02P004C05C11R1_044.ab1   508 
  186    USDA004F_H05_BF429045Ld02P004C05C11F1_044.ab1    80 
  190  C USDA004R_H05_BF429045Ld02P004C05C11R1_044.ab1   319 
  206    USDA004F_H05_BF429045Ld02P004C05C11F1_044.ab1   100 
  210  C USDA004R_H05_BF429045Ld02P004C05C11R1_044.ab1   299 
  238    USDA004F_H05_BF429045Ld02P004C05C11F1_044.ab1   132 
  246  C USDA004R_H05_BF429045Ld02P004C05C11R1_044.ab1   263 
  254    USDA004F_H05_BF429045Ld02P004C05C11F1_044.ab1   148 
  266  C USDA004R_H05_BF429045Ld02P004C05C11R1_044.ab1   243 
  298    USDA004F_H05_BF429045Ld02P004C05C11F1_044.ab1   192 
  306  C USDA004R_H05_BF429045Ld02P004C05C11R1_044.ab1   203 
  310    USDA004F_H05_BF429045Ld02P004C05C11F1_044.ab1   204 
  326  C USDA004R_H05_BF429045Ld02P004C05C11R1_044.ab1   183 
  330    USDA004F_H05_BF429045Ld02P004C05C11F1_044.ab1   224 
  350  C USDA004R_H05_BF429045Ld02P004C05C11R1_044.ab1   159 
  366    USDA004F_H05_BF429045Ld02P004C05C11F1_044.ab1   260 
  414  C USDA004R_H05_BF429045Ld02P004C05C11R1_044.ab1    95 
  418    USDA004F_H05_BF429045Ld02P004C05C11F1_044.ab1   312 
  426  C USDA004R_H05_BF429045Ld02P004C05C11R1_044.ab1    83 
  434    USDA004F_H05_BF429045Ld02P004C05C11F1_044.ab1   328 
Contig length: old 646, new 647

Contig length: old 647, new 647
New start: 0