No. words: 1034; after pruning: 1008


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:383)  381  0.00 0.00 0.00  USDA004F_A06_BF429045Ld03P004C05C11F1_037.ab1        1   384 (154)  C USDA004R_A06_BF429045Ld03P004C05C11R1_037.ab1   (112)   384     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C USDA004R_A06_BF429045Ld03P004C05C11R1_037.ab1   496 
  180    USDA004F_A06_BF429045Ld03P004C05C11F1_037.ab1    68 
  184  C USDA004R_A06_BF429045Ld03P004C05C11R1_037.ab1   313 
  216    USDA004F_A06_BF429045Ld03P004C05C11F1_037.ab1   104 
  224  C USDA004R_A06_BF429045Ld03P004C05C11R1_037.ab1   273 
  240    USDA004F_A06_BF429045Ld03P004C05C11F1_037.ab1   128 
  260  C USDA004R_A06_BF429045Ld03P004C05C11R1_037.ab1   237 
  264    USDA004F_A06_BF429045Ld03P004C05C11F1_037.ab1   152 
  272  C USDA004R_A06_BF429045Ld03P004C05C11R1_037.ab1   225 
  304    USDA004F_A06_BF429045Ld03P004C05C11F1_037.ab1   192 
  316  C USDA004R_A06_BF429045Ld03P004C05C11R1_037.ab1   181 
  320    USDA004F_A06_BF429045Ld03P004C05C11F1_037.ab1   208 
  324  C USDA004R_A06_BF429045Ld03P004C05C11R1_037.ab1   173 
  348    USDA004F_A06_BF429045Ld03P004C05C11F1_037.ab1   236 
  356  C USDA004R_A06_BF429045Ld03P004C05C11R1_037.ab1   141 
  372    USDA004F_A06_BF429045Ld03P004C05C11F1_037.ab1   260 
  380  C USDA004R_A06_BF429045Ld03P004C05C11R1_037.ab1   117 
  388    USDA004F_A06_BF429045Ld03P004C05C11F1_037.ab1   276 
  392  C USDA004R_A06_BF429045Ld03P004C05C11R1_037.ab1   105 
  404    USDA004F_A06_BF429045Ld03P004C05C11F1_037.ab1   292 
  420  C USDA004R_A06_BF429045Ld03P004C05C11R1_037.ab1    77 
  428    USDA004F_A06_BF429045Ld03P004C05C11F1_037.ab1   316 
  432  C USDA004R_A06_BF429045Ld03P004C05C11R1_037.ab1    65 
  440    USDA004F_A06_BF429045Ld03P004C05C11F1_037.ab1   328 
Contig length: old 650, new 650

Contig length: old 650, new 650
New start: 0