No. words: 1036; after pruning: 1010


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 5.4 (1,1:381)  370  0.00 0.00 0.26  USDA004F_C06_BF429045Ld05P004C05C11F1_038.ab1        5   382 (156)  C USDA004R_C06_BF429045Ld05P004C05C11R1_038.ab1   (121)   377     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C USDA004R_C06_BF429045Ld05P004C05C11R1_038.ab1   498 
  193    USDA004F_C06_BF429045Ld05P004C05C11F1_038.ab1    76 
  197  C USDA004R_C06_BF429045Ld05P004C05C11R1_038.ab1   302 
  221    USDA004F_C06_BF429045Ld05P004C05C11F1_038.ab1   104 
  229  C USDA004R_C06_BF429045Ld05P004C05C11R1_038.ab1   270 
  245    USDA004F_C06_BF429045Ld05P004C05C11F1_038.ab1   128 
  273  C USDA004R_C06_BF429045Ld05P004C05C11R1_038.ab1   226 
  285    USDA004F_C06_BF429045Ld05P004C05C11F1_038.ab1   168 
  289  C USDA004R_C06_BF429045Ld05P004C05C11R1_038.ab1   210 
  313    USDA004F_C06_BF429045Ld05P004C05C11F1_038.ab1   196 
  325  C USDA004R_C06_BF429045Ld05P004C05C11R1_038.ab1   174 
  329    USDA004F_C06_BF429045Ld05P004C05C11F1_038.ab1   212 
  345  C USDA004R_C06_BF429045Ld05P004C05C11R1_038.ab1   154 
  349    USDA004F_C06_BF429045Ld05P004C05C11F1_038.ab1   232 
  357  C USDA004R_C06_BF429045Ld05P004C05C11R1_038.ab1   142 
  377    USDA004F_C06_BF429045Ld05P004C05C11F1_038.ab1   260 
  381  C USDA004R_C06_BF429045Ld05P004C05C11R1_038.ab1   118 
  385    USDA004F_C06_BF429045Ld05P004C05C11F1_038.ab1   268 
  417  C USDA004R_C06_BF429045Ld05P004C05C11R1_038.ab1    82 
  425    USDA004F_C06_BF429045Ld05P004C05C11F1_038.ab1   308 
  433  C USDA004R_C06_BF429045Ld05P004C05C11R1_038.ab1    66 
  445    USDA004F_C06_BF429045Ld05P004C05C11F1_038.ab1   328 
Contig length: old 654, new 655

Contig length: old 655, new 655
New start: 0