No. words: 1046; after pruning: 1020


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:391)  384  0.00 0.00 0.26  USDA004F_D06_BF429045Ld06P004C05C11F1_046.ab1        1   392 (148)  C USDA004R_D06_BF429045Ld06P004C05C11R1_046.ab1   (115)   391     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C USDA004R_D06_BF429045Ld06P004C05C11R1_046.ab1   506 
  179    USDA004F_D06_BF429045Ld06P004C05C11F1_046.ab1    64 
  183  C USDA004R_D06_BF429045Ld06P004C05C11R1_046.ab1   324 
  231    USDA004F_D06_BF429045Ld06P004C05C11F1_046.ab1   116 
  239  C USDA004R_D06_BF429045Ld06P004C05C11R1_046.ab1   268 
  247    USDA004F_D06_BF429045Ld06P004C05C11F1_046.ab1   132 
  259  C USDA004R_D06_BF429045Ld06P004C05C11R1_046.ab1   248 
  327    USDA004F_D06_BF429045Ld06P004C05C11F1_046.ab1   212 
  363  C USDA004R_D06_BF429045Ld06P004C05C11R1_046.ab1   144 
  367    USDA004F_D06_BF429045Ld06P004C05C11F1_046.ab1   252 
  439  C USDA004R_D06_BF429045Ld06P004C05C11R1_046.ab1    68 
  443    USDA004F_D06_BF429045Ld06P004C05C11F1_046.ab1   328 
Contig length: old 654, new 655

Contig length: old 655, new 655
New start: 0