No. words: 1030; after pruning: 1004


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:380)  374  0.00 0.00 0.26  USDA004F_E06_BF429045Ld07P004C05C11F1_039.ab1        1   381 (155)  C USDA004R_E06_BF429045Ld07P004C05C11R1_039.ab1   (114)   380     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C USDA004R_E06_BF429045Ld07P004C05C11R1_039.ab1   494 
  178    USDA004F_E06_BF429045Ld07P004C05C11F1_039.ab1    64 
  182  C USDA004R_E06_BF429045Ld07P004C05C11R1_039.ab1   313 
  234    USDA004F_E06_BF429045Ld07P004C05C11F1_039.ab1   120 
  238  C USDA004R_E06_BF429045Ld07P004C05C11R1_039.ab1   257 
  246    USDA004F_E06_BF429045Ld07P004C05C11F1_039.ab1   132 
  262  C USDA004R_E06_BF429045Ld07P004C05C11R1_039.ab1   233 
  322    USDA004F_E06_BF429045Ld07P004C05C11F1_039.ab1   208 
  330  C USDA004R_E06_BF429045Ld07P004C05C11R1_039.ab1   165 
  338    USDA004F_E06_BF429045Ld07P004C05C11F1_039.ab1   224 
  358  C USDA004R_E06_BF429045Ld07P004C05C11R1_039.ab1   137 
  370    USDA004F_E06_BF429045Ld07P004C05C11F1_039.ab1   256 
  398  C USDA004R_E06_BF429045Ld07P004C05C11R1_039.ab1    97 
  406    USDA004F_E06_BF429045Ld07P004C05C11F1_039.ab1   292 
  418  C USDA004R_E06_BF429045Ld07P004C05C11R1_039.ab1    77 
  422    USDA004F_E06_BF429045Ld07P004C05C11F1_039.ab1   308 
  434  C USDA004R_E06_BF429045Ld07P004C05C11R1_039.ab1    61 
  438    USDA004F_E06_BF429045Ld07P004C05C11F1_039.ab1   324 
Contig length: old 649, new 650

Contig length: old 650, new 650
New start: 0