No. words: 1037; after pruning: 1011


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:381)  379  0.00 0.00 0.00  USDA004F_F06_BF429045Ld08P004C05C11F1_047.ab1        1   382 (159)  C USDA004R_F06_BF429045Ld08P004C05C11R1_047.ab1   (114)   382     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  192 nodes

 98 str. conn. components

Path
    1  C USDA004R_F06_BF429045Ld08P004C05C11R1_047.ab1   496 
  170    USDA004F_F06_BF429045Ld08P004C05C11F1_047.ab1    56 
  174  C USDA004R_F06_BF429045Ld08P004C05C11R1_047.ab1   323 
  194    USDA004F_F06_BF429045Ld08P004C05C11F1_047.ab1    80 
  198  C USDA004R_F06_BF429045Ld08P004C05C11R1_047.ab1   299 
  246    USDA004F_F06_BF429045Ld08P004C05C11F1_047.ab1   132 
  254  C USDA004R_F06_BF429045Ld08P004C05C11R1_047.ab1   243 
  310    USDA004F_F06_BF429045Ld08P004C05C11F1_047.ab1   196 
  318  C USDA004R_F06_BF429045Ld08P004C05C11R1_047.ab1   179 
  326    USDA004F_F06_BF429045Ld08P004C05C11F1_047.ab1   212 
  358  C USDA004R_F06_BF429045Ld08P004C05C11R1_047.ab1   139 
  362    USDA004F_F06_BF429045Ld08P004C05C11F1_047.ab1   248 
  418  C USDA004R_F06_BF429045Ld08P004C05C11R1_047.ab1    79 
  422    USDA004F_F06_BF429045Ld08P004C05C11F1_047.ab1   308 
  426  C USDA004R_F06_BF429045Ld08P004C05C11R1_047.ab1    71 
  430    USDA004F_F06_BF429045Ld08P004C05C11F1_047.ab1   316 
  458  C USDA004R_F06_BF429045Ld08P004C05C11R1_047.ab1    39 
  462    USDA004F_F06_BF429045Ld08P004C05C11F1_047.ab1   348 
  466  C USDA004R_F06_BF429045Ld08P004C05C11R1_047.ab1    31 
  470    USDA004F_F06_BF429045Ld08P004C05C11F1_047.ab1   356 
Contig length: old 655, new 655

Contig length: old 655, new 655
New start: 0