No. words: 1055; after pruning: 1029


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.8 (1,1:402)  387  0.00 0.00 0.74  USDA004F_G06_BF429045Ld09P004C05C11F1_040.ab1        1   405 (132)  C USDA004R_G06_BF429045Ld09P004C05C11R1_040.ab1   (116)   402     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C USDA004R_G06_BF429045Ld09P004C05C11R1_040.ab1   518 
  180    USDA004F_G06_BF429045Ld09P004C05C11F1_040.ab1    64 
  184  C USDA004R_G06_BF429045Ld09P004C05C11R1_040.ab1   335 
  224    USDA004F_G06_BF429045Ld09P004C05C11F1_040.ab1   108 
  228  C USDA004R_G06_BF429045Ld09P004C05C11R1_040.ab1   291 
  248    USDA004F_G06_BF429045Ld09P004C05C11F1_040.ab1   132 
  256  C USDA004R_G06_BF429045Ld09P004C05C11R1_040.ab1   263 
  268    USDA004F_G06_BF429045Ld09P004C05C11F1_040.ab1   152 
  276  C USDA004R_G06_BF429045Ld09P004C05C11R1_040.ab1   243 
  312    USDA004F_G06_BF429045Ld09P004C05C11F1_040.ab1   196 
  316  C USDA004R_G06_BF429045Ld09P004C05C11R1_040.ab1   203 
  320    USDA004F_G06_BF429045Ld09P004C05C11F1_040.ab1   204 
  360  C USDA004R_G06_BF429045Ld09P004C05C11R1_040.ab1   159 
  376    USDA004F_G06_BF429045Ld09P004C05C11F1_040.ab1   260 
  400  C USDA004R_G06_BF429045Ld09P004C05C11R1_040.ab1   119 
  416    USDA004F_G06_BF429045Ld09P004C05C11F1_040.ab1   300 
  420  C USDA004R_G06_BF429045Ld09P004C05C11R1_040.ab1    99 
  424    USDA004F_G06_BF429045Ld09P004C05C11F1_040.ab1   308 
  436  C USDA004R_G06_BF429045Ld09P004C05C11R1_040.ab1    83 
  444    USDA004F_G06_BF429045Ld09P004C05C11F1_040.ab1   328 
  460  C USDA004R_G06_BF429045Ld09P004C05C11R1_040.ab1    59 
  464    USDA004F_G06_BF429045Ld09P004C05C11F1_040.ab1   348 
Contig length: old 652, new 653

Contig length: old 653, new 653
New start: 0