No. words: 1039; after pruning: 1013


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.5 (1,1:383)  376  0.00 0.00 0.26  USDA004F_H06_BF429045Ld10P004C05C11F1_048.ab1        1   384 (159)  C USDA004R_H06_BF429045Ld10P004C05C11R1_048.ab1   (113)   383     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C USDA004R_H06_BF429045Ld10P004C05C11R1_048.ab1   496 
  169    USDA004F_H06_BF429045Ld10P004C05C11F1_048.ab1    56 
  173  C USDA004R_H06_BF429045Ld10P004C05C11R1_048.ab1   324 
  177    USDA004F_H06_BF429045Ld10P004C05C11F1_048.ab1    64 
  181  C USDA004R_H06_BF429045Ld10P004C05C11R1_048.ab1   316 
  245    USDA004F_H06_BF429045Ld10P004C05C11F1_048.ab1   132 
  253  C USDA004R_H06_BF429045Ld10P004C05C11R1_048.ab1   244 
  265    USDA004F_H06_BF429045Ld10P004C05C11F1_048.ab1   152 
  269  C USDA004R_H06_BF429045Ld10P004C05C11R1_048.ab1   228 
  325    USDA004F_H06_BF429045Ld10P004C05C11F1_048.ab1   212 
  333  C USDA004R_H06_BF429045Ld10P004C05C11R1_048.ab1   164 
  337    USDA004F_H06_BF429045Ld10P004C05C11F1_048.ab1   224 
  357  C USDA004R_H06_BF429045Ld10P004C05C11R1_048.ab1   140 
  373    USDA004F_H06_BF429045Ld10P004C05C11F1_048.ab1   260 
Contig length: old 655, new 656

Contig length: old 656, new 656
New start: 0