No. words: 1092; after pruning: 1066


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:309)  298  0.32 0.65 0.00  USDA008F_H05_BF473056Ld02P017D03P017D09F1_033.ab1        1   309 (192)  C USDA008R_H05_BF473056Ld02P017D03P017D09R1_033.ab1   (280)   311     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  146 nodes

 75 str. conn. components

Path
    1  C USDA008R_H05_BF473056Ld02P017D03P017D09R1_033.ab1   591 
  299    USDA008F_H05_BF473056Ld02P017D03P017D09F1_033.ab1    18 
  303  C USDA008R_H05_BF473056Ld02P017D03P017D09R1_033.ab1   289 
  315    USDA008F_H05_BF473056Ld02P017D03P017D09F1_033.ab1    34 
  327  C USDA008R_H05_BF473056Ld02P017D03P017D09R1_033.ab1   265 
  343    USDA008F_H05_BF473056Ld02P017D03P017D09F1_033.ab1    62 
  351  C USDA008R_H05_BF473056Ld02P017D03P017D09R1_033.ab1   241 
  359    USDA008F_H05_BF473056Ld02P017D03P017D09F1_033.ab1    78 
  363  C USDA008R_H05_BF473056Ld02P017D03P017D09R1_033.ab1   229 
  367    USDA008F_H05_BF473056Ld02P017D03P017D09F1_033.ab1    86 
  401  C USDA008R_H05_BF473056Ld02P017D03P017D09R1_033.ab1   191 
  405    USDA008F_H05_BF473056Ld02P017D03P017D09F1_033.ab1   124 
  417  C USDA008R_H05_BF473056Ld02P017D03P017D09R1_033.ab1   175 
  421    USDA008F_H05_BF473056Ld02P017D03P017D09F1_033.ab1   140 
Contig length: old 782, new 782

Contig length: old 782, new 782
New start: 0